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A
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B
|
C
|
E
|
G
|
I
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L
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M
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N
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P
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R
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S
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T
A
Analysis (class in biceps)
B
biceps
module
biceps.Analysis
module
biceps.convergence
module
biceps.decorators
module
biceps.J_coupling
module
biceps.KarplusRelation
module
biceps.PosteriorSampler
module
biceps.Restraint
module
biceps.toolbox
module
C
compute_autocorrelation_curves() (in module biceps.convergence)
compute_autocorrelation_time() (in module biceps.convergence)
compute_JSD() (in module biceps.convergence)
Convergence (class in biceps)
E
Ensemble (class in biceps)
exponential_fit() (in module biceps.convergence)
G
g() (in module biceps.convergence)
get_autocorrelation_curves() (biceps.Convergence method)
get_blocks() (in module biceps.convergence)
get_files() (in module biceps.toolbox)
I
init_restraint() (biceps.Restraint.Restraint_cs method)
(biceps.Restraint.Restraint_J method)
(biceps.Restraint.Restraint_noe method)
(biceps.Restraint.Restraint_pf method)
initialize_restraints() (biceps.Ensemble method)
L
list_extensions() (in module biceps.toolbox)
list_possible_extensions() (in module biceps.toolbox)
list_possible_restraints() (in module biceps.toolbox)
list_res() (in module biceps.toolbox)
M
module
biceps
biceps.Analysis
biceps.convergence
biceps.decorators
biceps.J_coupling
biceps.KarplusRelation
biceps.PosteriorSampler
biceps.Restraint
biceps.toolbox
N
neglogP() (biceps.PosteriorSampler method)
npz_to_DataFrame() (in module biceps.toolbox)
P
plot() (biceps.Analysis method)
plot_auto_curve() (biceps.Convergence method)
plot_block_avg() (biceps.Convergence method)
plot_traces() (biceps.Convergence method)
PosteriorSampler (class in biceps)
PosteriorSamplingTrajectory (class in biceps)
Preparation (class in biceps.Restraint)
process() (biceps.Convergence method)
process_results() (biceps.PosteriorSamplingTrajectory method)
R
Restraint (class in biceps.Restraint)
S
sample() (biceps.PosteriorSampler method)
save_object() (in module biceps.toolbox)
sort_data() (in module biceps.toolbox)
T
to_list() (biceps.Ensemble method)
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